Publications

Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology, Gennady B. Sushko, Ilia A. Solov'yov, Alexey V. Verkhovtsev, Sergey N. Volkov, Andrey V. Solov'yov, European Physical Journal D, 70, 1-12, (2016)
Foldning af cryptochrome - hvor svært kan det være?, Claus Nielsen, Hjerneblod, 6, 62-68, (2016)
Binding Site Recognition and Docking Dynamics of a Single Electron Transport Protein: Cytochrome c2, Abhishek Singharoy, Angela M. Barragan, Sundarapandian Thangapandian, Emad Tajkhorshid, Klaus Schulten, Journal of the American Chemical Society, 138, 12077-12089, (2016)
Atomic detail visualization of photosynthetic membranes with GPU-accelerated ray tracing, John E. Stone, Melih Sener, Kirby L. Vandivort, Angela Barragan, Abhishek Singharoy, Ivan Teo, João V. Ribeiro, Barry Isralewitz, Bo Liu, Boon Chong Goh, James C. Phillips, Craig MacGregor-Chatwin, Matthew P. Johnson, Lena F. Kourkoutis, C. Neil Hunter, Klaus Schulten, Parallel Computing, 55, 17 - 27, (2016)
Molecular dynamics studies of DNA photolyase and cryptochromes binding to DNA with a (6-4) photolesion, Katrine Aalbæk Jepsen, Odense, Denmark, 1 — 44, Bachelor Thesis, University of Southern Denmark, (2016)
2015
0, 0, (2015)
Preparing giant unilamellar vesicles (GUVs) of complex lipid mixtures on demand: Mixing small unilamellar vesicles of compositionally heterogeneous mixtures, Tripta Bhatia, Peter Husen, Jonathan Brewer, Luis A. Bagatolli, Per L. Hansen, John H. Ipsen, Ole G. Mouritsen, Biochimica et Biophysica Acta (BBA) - Biomembranes, 1848, 3175 - 3180, (2015)
Real sequence effects on the search dynamics of transcription factors on DNA, Maximilian Bauer, Emil S. Rasmussen, Michael A. Lomholt, Ralf Metzler, Scientific Reports, 5, 10072, (2015)
Quantifying electron transfer reactions in biological systems: what interactions play the major role?, Emil Sjulstok, Jogvan Magnus Haugaard Olsen, Ilia A. Solov'yov, Scientific Reports, 5, 18446, (2015)
MBN Explorer: Dynamics of Biomolecular Systems and Self-organization, Ilia A. Solov'yov, Gennady B. Sushko, Alexey V. Verkhovtsev, Andrei V. Korol, Andrey V. Solov'yov, St. Petersburg State Polytechnic University, St. Petersburg, Russia, Polytechnic University Publishing House, (2015)