Previous Pause Next

Introducing VIKING: A Novel Online Platform for Multiscale Modeling. V.Korol et al. ACS Omega, 5, 2, 1254-1260 (2020)

Prechondrogenic {ATDC5} cell attachment and differentiation on graphene foam; modulation by surface functionalization with fibronectin, S.M. Frahs et al, ACS Applied Materials and Interfaces 11, pp.41906-41924 (2019)

Et radikalt kompas viser fugelene vej. E. Sjulstok, C. Nielsen, I.A. Solov'yov. Aktuel Naturvidenskab 5, pp 30-33, (2018)

Atomistic Insights into Cryptochrome Interprotein Interactions. Sarafina M. Kimø, Ida Friis, Ilia A. Solov’yov, Biophysical Journal 115, 616-628, 2018

Electron transfer from ascorbic acid to a photo-activated state of cryptochrome could enhance the ability of the protein to respond to the Earth's magnetic field and so result in a more efficient magnetic compass sensor in night-migratory songbirds.

Charge Transfer at the Qo‑Site of the Cytochrome bc1 Complex Leads to Superoxide Production. Adrian Bøgh Salo, Peter Husen, Ilia A. Solov’yov. J. Phys. Chem. B, 121: 1771−1782, 2017.

Mechanism of the Primary Charge Transfer Reaction in the Cytochrome bc1 Complex. Angela M. Barragan, Klaus Schulten, Ilia A. Solov'yov. J. Phys. Chem. B, 120: 11369−11380, 2016.

Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology. Image credit: Ilia A. Solov’yov, Andrey V. Solov’yov. Eur. Phys. J. D, 70: 1-12, 2016.

Spontaneous Binding of Molecular Oxygen at the Qo-Site of the bc1 Complex Could Stimulate Superoxide Formation. Image credit: P. Husen, I.A. Solov'yov. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849'>http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849</a>.

Electron spin relaxation in cryptochrome-based magnetoreception. Image credit: Ilia A. Solov'yov, P. J. Hore, Daniel R. Kattnig. URL: <a href='http://dx.doi.org/10.1039/C5CP06731F'>http://dx.doi.org/10.1039/C5CP06731F</a>.

Identification of Ubiquinol Binding Motifs at the Qo-Site of the Cytochrome bc1 Complex; Image credit: Angela M. Barragan, Klaus Schulten, Ilia A. Solov'yov. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/jp510022w'>http://pubs.acs.org/doi/abs/10.1021/jp510022w</a>

Efficient 3D Kinetic Monte Carlo Method for Modeling of Molecular Structure and Dynamics. Image credit: Mikhail Panshenskov, Ilia A. Solov'yov and Andrey V. Solov'yov. URL: <a href='http://onlinelibrary.wiley.com/doi/10.1002/jcc.23613/abstract'>http://onlinelibrary.wiley.com/doi/10.1002/jcc.23613/abstract</a>.

An Introduction to Cluster Science. Image credit: Paul-Gerhard Reinhard, Eric Suraud, Phuong Mai Dinh, Ilia A. Solov'yov, Andrey V. Solov'yov. URL: <a href='http://www.wiley.com/WileyCDA/WileyTitle/productCd-3527411186.html'>http://www.wiley.com/WileyCDA/WileyTitle/productCd-3527411186.html</a>.

An atomic model of the human immunodeficiency virus-1 (HIV-1) capsid within a representation of the viral envelope. Image credit: Juan R. Perilla, John Stone, Ilia A. Solov'yov, Olga Svinarski, Klaus Schulten and Peijun Zhang. URL: <a href='http://www.nature.com/nature/journal/v497/n7451/index.html'>http://www.nature.com/nature/journal/v497/n7451/index.html</a>

Decrypting Cryptochrome: Revealing the Molecular Identity of the Photoactivation. Image credit: Ilia A. Solov'yov, Tatiana Domratcheva, Abdul Rehaman Moughal Shahi, and Klaus Schulten. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/ja3074819'>http://pubs.acs.org/doi/abs/10.1021/ja3074819</a>

MesoBioNano Explorer — A universal program for multiscale computer simulations of complex molecular structure and dynamics. Image credit: Ilia A. Solov'yov, Alexander V. Yakubovich, Pavel V. Nikolaev, Ilya Volkovets, Andrey V. Solov'yov. URL: <a href='http://onlinelibrary.wiley.com/doi/10.1002/jcc.23086/abstract'>http://onlinelibrary.wiley.com/doi/10.1002/jcc.23086/abstract</a>

Publications

Year

Title

Author(s)

Abstract contains

Journal(s)

2020

0, (2020)

Binding of dipeptidyl peptidase III to the oxidative stress cell sensor Kelch-like ECH-associated protein 1 is a two-step process, MatiÄ, Sara, Kekez, Ivana, Tomin, Marko, Bogar, Ferenc, Å upljika, Filip, HaniÄ, Maja, Jha, Shalinee, BrkiÄ, Hrvoje, Bourgeois, Benjamin, Madl, Tobias, Gruber, Karl, Macheroux, Peter, MatkoviÄ-ÄalogoviÄ, Dubravka, Matovina, Mihaela, TomiÄ, Sanja, (2020)

Multiscale simulation of the focused electron beam induced deposition process, Pablo de Vera, Martina Azzolini, Gennady Sushko, Isabel Abril, Rafael Garcia-Molina, Maurizio Dapor, Ilia A. Solov'yov, Andrey V. Solov'yov, Scientific Reports, 10, 20827, (2020)

Modeling the effect of ion-induced shock waves and DNA breakage with the reactive CHARMM force field, Ida Friis, Alexey Verkhovtsev, Ilia A. Solov'yov, Andrey V. Solov'yov, Journal of Computational Chemistry, 41, 2429-2439, (2020)

Correction to "Spontaneous Binding of Molecular Oxygen at the Qo-Site of the bc1 Complex Could Stimulate Superoxide Formation", Peter Husen, Ilia A. Solov'yov, Journal of the American Chemical Society, 142, 11314-11314, (2020)

Quantum mechanical simulations of a carbon ion colliding with a biological target, Andreas Alberg-Fløjborg, Adrian Bøgh Salo, Ilia A. Solov'yov, Journal of Physics B: Atomic, Molecular and Optical Physics, 53, 145202, (2020)

Structural Explanations of Flavin Adenine Dinucleotide Binding in Drosophila melanogaster Cryptochrome, Emil Sjulstok, Ilia A. Solov'yov, Journal of Physical Chemistry Letters, 11, 3866-3870, (2020)

Special issue: Dynamics of systems on the nanoscale (2018). Editorial, Ilko Bald, Ilia A. Solov'yov, Nigel Mason, Andrey V. Solov'yov, European Physical Journal D, 74, 75-82, (2020)

PLANCKS 2019, H.R. Heebøll, J.M. Benfeldt, M.H. From, E.V. Jørgensen, N. Stiesdal, H. Busche, S. Hofferberth, I.A. Solov'yov, A. Frederiksen, European Journal of Physics, 41, 034002, (2020)

Computational analysis of amino acids' adhesion to the graphene surface, Anders Frederiksen, Ilia A. Solov'yov, European Physical Journal D, 74, 44-55, (2020)