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Irradiation-driven molecular dynamics: a review

The Journal of Physical Chemistry B - September 2, 2021

Magnetic sensitivity of cryptochrome 4 from a migratory songbird

Introducing VIKING: A Novel Online Platform for Multiscale Modeling. V.Korol et al. ACS Omega, 5, 2, 1254-1260 (2020)

Prechondrogenic {ATDC5} cell attachment and differentiation on graphene foam; modulation by surface functionalization with fibronectin, S.M. Frahs et al, ACS Applied Materials and Interfaces 11, pp.41906-41924 (2019)

Et radikalt kompas viser fugelene vej. E. Sjulstok, C. Nielsen, I.A. Solov'yov. Aktuel Naturvidenskab 5, pp 30-33, (2018)

Atomistic Insights into Cryptochrome Interprotein Interactions. Sarafina M. Kimø, Ida Friis, Ilia A. Solov’yov, Biophysical Journal 115, 616-628, 2018

Electron transfer from ascorbic acid to a photo-activated state of cryptochrome could enhance the ability of the protein to respond to the Earth's magnetic field and so result in a more efficient magnetic compass sensor in night-migratory songbirds.

Charge Transfer at the Qo‑Site of the Cytochrome bc1 Complex Leads to Superoxide Production. Adrian Bøgh Salo, Peter Husen, Ilia A. Solov’yov. J. Phys. Chem. B, 121: 1771−1782, 2017.

Mechanism of the Primary Charge Transfer Reaction in the Cytochrome bc1 Complex. Angela M. Barragan, Klaus Schulten, Ilia A. Solov'yov. J. Phys. Chem. B, 120: 11369−11380, 2016.

Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology. Image credit: Ilia A. Solov’yov, Andrey V. Solov’yov. Eur. Phys. J. D, 70: 1-12, 2016.

Spontaneous Binding of Molecular Oxygen at the Qo-Site of the bc1 Complex Could Stimulate Superoxide Formation. Image credit: P. Husen, I.A. Solov'yov. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849'>http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849</a>.

Electron spin relaxation in cryptochrome-based magnetoreception. Image credit: Ilia A. Solov'yov, P. J. Hore, Daniel R. Kattnig. URL: <a href='http://dx.doi.org/10.1039/C5CP06731F'>http://dx.doi.org/10.1039/C5CP06731F</a>.

Identification of Ubiquinol Binding Motifs at the Qo-Site of the Cytochrome bc1 Complex; Image credit: Angela M. Barragan, Klaus Schulten, Ilia A. Solov'yov. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/jp510022w'>http://pubs.acs.org/doi/abs/10.1021/jp510022w</a>

Efficient 3D Kinetic Monte Carlo Method for Modeling of Molecular Structure and Dynamics. Image credit: Mikhail Panshenskov, Ilia A. Solov'yov and Andrey V. Solov'yov. URL: <a href='http://onlinelibrary.wiley.com/doi/10.1002/jcc.23613/abstract'>http://onlinelibrary.wiley.com/doi/10.1002/jcc.23613/abstract</a>.

Publications

Year

Title

Author(s)

Abstract contains

Journal(s)

2023

0, (2023)

Dimerization of European Robin Cryptochrome 4a, Maja Hanić, Lewis M. Antill, Angela S. Gehrckens, Jessica Schmidt, Katharina Görtemaker, Rabea Bartölke, Tarick J. El-Baba, Jingjing Xu, Karl-Wilhelm Koch, Henrik Mouritsen, Justin L. P. Benesch, P. J. Hore, Ilia A. Solov'yov, Journal of Physical Chemistry B, 127, 6251-6264, (2023)

Mutational Study of the Tryptophan Tetrad Important for Electron Transfer in European Robin Cryptochrome 4a, Anders Frederiksen, Corinna Langebrake, Maja Hanić, Georg Manthey, Henrik Mouritsen, Miriam Liedvogel, Ilia A. Solov'yov, ACS Omega, 8, 26425-26436, (2023)

Upper bound for broadband radiofrequency field disruption of magnetic compass orientation in night-migratory songbirds, Bo Leberecht, Siu Ying Wong, Baladev Satish, Sara Döge, Jakob Hindman, Lalitha Venkatraman, Shambhavi Apte, Katrin Haase, Isabelle Musielak, Glen Dautaj, Ilia A. Solov'yov, Michael Winklhofer, Henrik Mouritsen, P. J. Hore, Proceedings of the National Academy of Sciences, USA, 120, e2301153120, (2023)

Tracking the Electron Transfer Cascade in European Robin Cryptochrome 4 Mutants, Daniel Timmer, Anders Frederiksen, Daniel C. Lünemann, Anitta R. Thomas, Jingjing Xu, Rabea Bartölke, Jessica Schmidt, Tomáš Kubař, Antonietta De Sio, Ilia A. Solov'yov, Henrik Mouritsen, Christoph Lienau, Journal of the American Chemical Society, 145, 11566-11578, (2023)

Across atoms to crossing continents: Application of similarity measures to biological location data, Fabian Schuhmann, Leonie Ryvkin, James D. McLaren, Luca Gerhards, Ilia A. Solov'yov, PLoS ONE, 18, e0284736, (2023)

Modeling spin relaxation in complex radical systems using MolSpin, Luca Gerhards, Claus Nielsen, Daniel R. Kattnig, P. J. Hore, Ilia A. Solov'yov, Journal of Computational Chemistry, 44, 1704-1714, (2023)

Spin Dynamics of Flavoproteins, Jörg Matysik, Luca Gerhards, Tobias Theiss, Lisa Timmermann, Patrick Kurle-Tucholski, Guzel Musabirova, Ruonan Qin, Frank Ortmann, Ilia A. Solov'yov, Tanja Gulder, International Journal of Molecular Sciences, 24, 8218-(1-19), (2023)

Magnetic field effects on radical pair reactions: estimation of B1/2 for flavin-tryptophan radical pairs in cryptochromes, Siu Ying Wong, Philip Benjamin, P. J. Hore, Physical Chemistry - Chemical Physics, 25, 975-982, (2023)

ForceFold: Extending AlphaFold with a ForceField Loss Term, Georg Manthey, (2023)