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Irradiation-driven molecular dynamics: a review

The Journal of Physical Chemistry B - September 2, 2021

Magnetic sensitivity of cryptochrome 4 from a migratory songbird

Introducing VIKING: A Novel Online Platform for Multiscale Modeling. V.Korol et al. ACS Omega, 5, 2, 1254-1260 (2020)

Prechondrogenic {ATDC5} cell attachment and differentiation on graphene foam; modulation by surface functionalization with fibronectin, S.M. Frahs et al, ACS Applied Materials and Interfaces 11, pp.41906-41924 (2019)

Et radikalt kompas viser fugelene vej. E. Sjulstok, C. Nielsen, I.A. Solov'yov. Aktuel Naturvidenskab 5, pp 30-33, (2018)

Atomistic Insights into Cryptochrome Interprotein Interactions. Sarafina M. Kimø, Ida Friis, Ilia A. Solov’yov, Biophysical Journal 115, 616-628, 2018

Electron transfer from ascorbic acid to a photo-activated state of cryptochrome could enhance the ability of the protein to respond to the Earth's magnetic field and so result in a more efficient magnetic compass sensor in night-migratory songbirds.

Charge Transfer at the Qo‑Site of the Cytochrome bc1 Complex Leads to Superoxide Production. Adrian Bøgh Salo, Peter Husen, Ilia A. Solov’yov. J. Phys. Chem. B, 121: 1771−1782, 2017.

Mechanism of the Primary Charge Transfer Reaction in the Cytochrome bc1 Complex. Angela M. Barragan, Klaus Schulten, Ilia A. Solov'yov. J. Phys. Chem. B, 120: 11369−11380, 2016.

Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology. Image credit: Ilia A. Solov’yov, Andrey V. Solov’yov. Eur. Phys. J. D, 70: 1-12, 2016.

Spontaneous Binding of Molecular Oxygen at the Qo-Site of the bc1 Complex Could Stimulate Superoxide Formation. Image credit: P. Husen, I.A. Solov'yov. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849'>http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849</a>.

Electron spin relaxation in cryptochrome-based magnetoreception. Image credit: Ilia A. Solov'yov, P. J. Hore, Daniel R. Kattnig. URL: <a href='http://dx.doi.org/10.1039/C5CP06731F'>http://dx.doi.org/10.1039/C5CP06731F</a>.

Identification of Ubiquinol Binding Motifs at the Qo-Site of the Cytochrome bc1 Complex; Image credit: Angela M. Barragan, Klaus Schulten, Ilia A. Solov'yov. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/jp510022w'>http://pubs.acs.org/doi/abs/10.1021/jp510022w</a>

Efficient 3D Kinetic Monte Carlo Method for Modeling of Molecular Structure and Dynamics. Image credit: Mikhail Panshenskov, Ilia A. Solov'yov and Andrey V. Solov'yov. URL: <a href='http://onlinelibrary.wiley.com/doi/10.1002/jcc.23613/abstract'>http://onlinelibrary.wiley.com/doi/10.1002/jcc.23613/abstract</a>.

An Introduction to Cluster Science. Image credit: Paul-Gerhard Reinhard, Eric Suraud, Phuong Mai Dinh, Ilia A. Solov'yov, Andrey V. Solov'yov. URL: <a href='http://www.wiley.com/WileyCDA/WileyTitle/productCd-3527411186.html'>http://www.wiley.com/WileyCDA/WileyTitle/productCd-3527411186.html</a>.

Publications

Year

Title

Author(s)

Abstract contains

Journal(s)

2021

0, (2021)

Cryptochrome magnetoreception: four tryptophans could be better than three, Siu Ying Wong, Yujing Wei, Henrik Mouritsen, Ilia A. Solov'yov, P. J. Hore, Journal of the Royal Society Interface, 18, 20210601, (2021)

Navigation of migratory songbirds: a quantum magnetic compass sensor, Siu Ying Wong, Anders Frederiksen, Maja Hanić, Fabian Schuhmann, Gesa Grüning, P. J. Hore, Ilia A. Solov'yov, Neuroforum, 27, 141-150, (2021)

Exploring Post-activation Conformational Changes in Pigeon Cryptochrome 4, Fabian Schuhmann, Daniel R. Kattnig, Ilia A. Solov'yov, Journal of Physical Chemistry B, 125, 9652-9659, (2021)

Advances in multiscale modeling for novel and emerging technologies, Alexey V. Verkhovtsev, Ilia A. Solov'yov, Andrey V. Solov'yov, European Physical Journal D, 75, 217-(1-18), (2021)

Irradiation-driven molecular dynamics: a review, Alexey V. Verkhovtsev, Ilia A. Solov'yov, Andrey V. Solov'yov, European Physical Journal D, 75, 213-(1-12), (2021)

Magnetic sensitivity of cryptochrome 4 from a migratory songbird, Jingjing Xu, Lauren E. Jarocha, Tilo Zollitsch, Marcin Konowalczyk, Kevin B. Henbest,Sabine Richert, Matthew J. Golesworthy, Jessica Schmidt, Victoire Déjean, Daniel J. C. Sowood, Marco Bassetto, Jiate Luo, Jessica R. Walton, Jessica Fleming, Yujing Wei, Tommy L. Pitcher, Gabriel Moise, Maike Herrmann, Hang Yin, Haijia Wu, Rabea Bartölke, Stefanie J. Käsehagen, Simon Horst, Glen Dautaj, Patrick D. F. Murton, Angela S. Gehrckens, Yogarany Chelliah, Joseph S. Takahashi, Karl-Wilhelm Koch, Stefan Weber, Ilia A. Solov'yov, Can Xie, Stuart R. Mackenzie, Christiane R. Timmel, Henrik Mouritsen, P., Nature, 594, 535-540, (2021)

Modeling the Energy Landscape of Side Reactions in the Cytochrome bc1 Complex, Peter Husen, Ilia A. Solov'yov, Frontiers in Chemistry, 9, 643796, (2021)

Inhibition Mechanism of Antimalarial Drugs Targeting the Cytochrome bc1 Complex, Luise Jacobsen, Peter Husen, Ilia A. Solov'yov, Journal of Chemical Information and Modeling, 61, 1334-1345, (2021)

Frontiers in Multiscale Modeling of Photoreceptor Proteins, Maria-Andrea Mroginski, Suliman Adam, Gil S. Amoyal, Avishai Barnoy, Ana-Nicoleta Bondar, Veniamin A. Borin,Jonathan R. Church, Tatiana Domratcheva, Bernd Ensing, Francesca Fanelli, Nicolas Ferré, Ofer Filiba, Laura Pedraza-González, Ronald González, Cristina E. González-Espinoza, Rajiv K. Kar, Lukas Kemmler, Seung Soo Kim, Jacob Kongsted, Anna I. Krylov, Yigal Lahav, Michalis Lazaratos, Qays NasserEddin, Isabelle Navizet, Alexander Nemukhin, Massimo Olivucci, Jógvan Magnus Haugaard Olsen, Alberto Párez de Alba Ortíz, Elisa Pieri, Aditya G., Photochemistry and Photobiology, 97, 243-269, (2021)