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Irradiation-driven molecular dynamics: a review

The Journal of Physical Chemistry B - September 2, 2021

Magnetic sensitivity of cryptochrome 4 from a migratory songbird

Introducing VIKING: A Novel Online Platform for Multiscale Modeling. V.Korol et al. ACS Omega, 5, 2, 1254-1260 (2020)

Prechondrogenic {ATDC5} cell attachment and differentiation on graphene foam; modulation by surface functionalization with fibronectin, S.M. Frahs et al, ACS Applied Materials and Interfaces 11, pp.41906-41924 (2019)

Et radikalt kompas viser fugelene vej. E. Sjulstok, C. Nielsen, I.A. Solov'yov. Aktuel Naturvidenskab 5, pp 30-33, (2018)

Atomistic Insights into Cryptochrome Interprotein Interactions. Sarafina M. Kimø, Ida Friis, Ilia A. Solov’yov, Biophysical Journal 115, 616-628, 2018

Electron transfer from ascorbic acid to a photo-activated state of cryptochrome could enhance the ability of the protein to respond to the Earth's magnetic field and so result in a more efficient magnetic compass sensor in night-migratory songbirds.

Charge Transfer at the Qo‑Site of the Cytochrome bc1 Complex Leads to Superoxide Production. Adrian Bøgh Salo, Peter Husen, Ilia A. Solov’yov. J. Phys. Chem. B, 121: 1771−1782, 2017.

Mechanism of the Primary Charge Transfer Reaction in the Cytochrome bc1 Complex. Angela M. Barragan, Klaus Schulten, Ilia A. Solov'yov. J. Phys. Chem. B, 120: 11369−11380, 2016.

Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology. Image credit: Ilia A. Solov’yov, Andrey V. Solov’yov. Eur. Phys. J. D, 70: 1-12, 2016.

Spontaneous Binding of Molecular Oxygen at the Qo-Site of the bc1 Complex Could Stimulate Superoxide Formation. Image credit: P. Husen, I.A. Solov'yov. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849'>http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849</a>.

Electron spin relaxation in cryptochrome-based magnetoreception. Image credit: Ilia A. Solov'yov, P. J. Hore, Daniel R. Kattnig. URL: <a href='http://dx.doi.org/10.1039/C5CP06731F'>http://dx.doi.org/10.1039/C5CP06731F</a>.

Identification of Ubiquinol Binding Motifs at the Qo-Site of the Cytochrome bc1 Complex; Image credit: Angela M. Barragan, Klaus Schulten, Ilia A. Solov'yov. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/jp510022w'>http://pubs.acs.org/doi/abs/10.1021/jp510022w</a>

Efficient 3D Kinetic Monte Carlo Method for Modeling of Molecular Structure and Dynamics. Image credit: Mikhail Panshenskov, Ilia A. Solov'yov and Andrey V. Solov'yov. URL: <a href='http://onlinelibrary.wiley.com/doi/10.1002/jcc.23613/abstract'>http://onlinelibrary.wiley.com/doi/10.1002/jcc.23613/abstract</a>.

An Introduction to Cluster Science. Image credit: Paul-Gerhard Reinhard, Eric Suraud, Phuong Mai Dinh, Ilia A. Solov'yov, Andrey V. Solov'yov. URL: <a href='http://www.wiley.com/WileyCDA/WileyTitle/productCd-3527411186.html'>http://www.wiley.com/WileyCDA/WileyTitle/productCd-3527411186.html</a>.

Publications

Year

Title

Author(s)

Abstract contains

Journal(s)

2022

0, (2022)

The Transition of Photoreceptor Guanylate Cyclase Type 1 to the Active State, Manisha Kumari Shahu, Fabian Schuhmann, Alexander Scholten, Ilia A. Solov'yov, Karl-Wilhelm Koch, International Journal of Molecular Sciences, 23, 1422-0067, (2022)

Broadband 75-85 MHz radiofrequency fields disrupt magnetic compass orientation in night-migratory songbirds consistent with a flavin-based radical pair magnetoreceptor, Bo Leberecht, Dmitry Kobylkov, Thiemo Karwinkel, Sara Döge, Lars Burnus, Siu Ying Wong, Shambhavi Apte, Katrin Haase, Isabelle Musielak, Raisa Chetverikova, Glen Dautaj, Marco Bassetto, Michael Winklhofer, P. J. Hore, Henrik Mouritsen, Journal of Comparative Physiology A, (2022)

Local elastic properties of polystyrene nanocomposites increase significantly due to nonaffine deformations, Yaroslav M. Beltukov, Dmitry A. Conyuh, Ilia A. Solov'yov, Physical Review E, 105, L012501-(1-6), (2022)

2021

0, (2021)

Exploring Post-activation Conformational Changes in Pigeon Cryptochrome 4, Fabian Schuhmann, Daniel R. Kattnig, Ilia A. Solov'yov, Journal of Physical Chemistry B, 125, 9652-9659, (2021)

Introducing Pep McConst — A user-friendly peptide modeler for biophysical applications, Fabian Schuhmann, Vasili Korol, Ilia A. Solov'yov, Journal of Computational Chemistry, 42, 572-580, (2021)

Studying phase transitions of alanine-polypeptides in water using molecular dynamics, Jonathan Hungerland, under the joint supervision of Anders Frederiksen, Ilia A. Solov'yov, (2021)

Lethal DNA damage caused by ion-induced shock waves in cells, Ida Friis, Alexey Verkhovtsev, Ilia A. Solov'yov, Andrey V. Solov'yov, Physical Review E, 104, 054408, (2021)

Cryptochrome magnetoreception: four tryptophans could be better than three, Siu Ying Wong, Yujing Wei, Henrik Mouritsen, Ilia A. Solov'yov, P. J. Hore, Journal of the Royal Society Interface, 18, 20210601, (2021)