VIKING

VIKING (Scandinavian Online Kit For Nanoscale Modeling), available at viking-suite.com, is a convenient, user-friendly online interface for running various simulations developed and maintained by QuantBioLab. It breaks down popular software packages to be set up in a wizard supplying an abundance of default settings. This wizard makes the included software accessible to beginners to biomedical and biochemical computer simulations and significantly decreases the time spent by experts.

Currently, VIKING includes the following software:

 

 

While all the software is continuously developed to increase functionality or adhere to modern computational possibilities, VIKING is undergoing continuous development to accommodate such updates, including, but not limited to, allowing choices between Gaussian09 and Gaussian16 or, depending on the available supercomputer resource, simulate with both NAMD2 or NAMD3. Furthermore, VIKING undergoes upgrades with software developed within the workgroup to broaden the possibilities. Such tasks include MolSpin, Virtual Screening, or Pep McConst.

For further information, please visit viking-suite.com.

Recent Publications

Magnetic sensitivity of cryptochrome 4 from a migratory songbird, Jingjing Xu, Lauren E. Jarocha, Tilo Zollitsch, Marcin Konowalczyk, Kevin B. Henbest,Sabine Richert, Matthew J. Golesworthy, Jessica Schmidt, Victoire Déjean, Daniel J. C. Sowood,Marco Bassetto, Jiate Luo, Jessica R. Walton, Jessica Fleming, Yujing Wei, Tommy L. Pitcher, Gabriel Moise, Maike Herrmann, Hang Yin, Haijia Wu, Rabea Bartölke, Stefanie J. Käsehagen, Simon Horst, Glen Dautaj, Patrick D. F. Murton, Angela S. Gehrckens, Yogarany Chelliah, Joseph S. Takahashi, Karl-Wilhelm Koch, Stefan Weber, Ilia A. Solov'yov, Can Xie, Stuart R. Mackenzie, Christiane R. Timmel, Henrik Mouritsen, P. J., Nature, 594, 535-540, (2021)
Introducing Pep McConst — A user-friendly peptide modeler for biophysical applications, Fabian Schuhmann, Vasili Korol, Ilia A. Solov'yov, Journal of Computational Chemistry, 42, 572-580, (2021)
Frontiers in Multiscale Modeling of Photoreceptor Proteins, Maria-Andrea Mroginski, Suliman Adam, Gil S. Amoyal, Avishai Barnoy, Ana-Nicoleta Bondar, Veniamin A. Borin,Jonathan R. Church, Tatiana Domratcheva, Bernd Ensing, Francesca Fanelli, Nicolas Ferré, Ofer Filiba,Laura Pedraza-González, Ronald González, Cristina E. González-Espinoza, Rajiv K. Kar, Lukas Kemmler, Seung Soo Kim, Jacob Kongsted, Anna I. Krylov, Yigal Lahav, Michalis Lazaratos, Qays NasserEddin, Isabelle Navizet, Alexander Nemukhin, Massimo Olivucci, Jógvan Magnus Haugaard Olsen, Alberto Párez de Alba Ortíz, Elisa Pieri, Aditya G., Photochemistry and Photobiology, 97, 243-269, (2021)
Introducing VIKING: A Novel Online Platform for Multiscale Modeling, Vasili Korol, Peter Husen, Emil Sjulstok, Claus Nielsen, Ida Friis, Anders Frederiksen, Adrian Bøgh Salo, Ilia A. Solov'yov, ACS Omega, 5, 1254-1260, (2020)